Showing : gene expression • reset
9
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6
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1.8k
views
Representative gene expression value in one condition with several replicates
rnaseq gene expression edger
updated 6.4 years ago by 50k • written 6.4 years ago by • 0
7
votes
13
replies
2.3k
views
Test whether expression levels of two gene sets are significantly different
R DESeq2 gene set testing gene expression
7.5 years ago Jon Bråte ▴ 250
3
votes
11
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2.4k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression geoquery GSE bioconductor microarray
updated 5.7 years ago by 21k • written 5.7 years ago by ▴ 20
3
votes
4
replies
981
views
edgeR analysis of cells treated with either drug1, drug2, or a time matched control at two different time points, did I set this up correctly?
edger rnaseq gene expression bioinformatics
updated 5.7 years ago by 50k • written 5.7 years ago by • 0
3
votes
3
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1.8k
views
Differential Expression Analysis in edgeR using Anova
edger anova gene expression Dispersion
updated 4.9 years ago by • 0 • written 5.3 years ago by • 0
2
votes
4
replies
4.6k
views
WGCNA: intrepreting grey unassigned "module"?
WGCNA rnaseq gene expression co-expression network
updated 6.0 years ago by ★ 3.0k • written 6.1 years ago by ▴ 10
2
votes
2
replies
1.4k
views
SAM/siggenes: Differential gene expression analysis
SAM siggenes microarray gene expression sam
7.3 years ago Brian Smith ▴ 120
2
votes
3
replies
968
views
How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 5.3 years ago by 41k • written 5.3 years ago by ▴ 30
2
votes
2
replies
835
views
Limma design matrix separate channel analysis with same control
limma design matrix gene expression
updated 5.3 years ago by 50k • written 5.3 years ago by • 0
2
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1
reply
1.0k
views
gene expression data analysis and batch effect methods
batch effect gene expression
updated 6.9 years ago by ▴ 420 • written 7.0 years ago by • 0
2
votes
1
reply
4.7k
views
Using DESeq2 to analyse TCGA data
deseq2 tcga tcgabiolinks gene expression differential expression
updated 6.2 years ago by 41k • written 6.2 years ago by • 0
1
vote
3
replies
1.7k
views
RPM data analysis with DESeq2
deseq2 RPM gene expression
5.1 years ago ruhollah.mb • 0
1
vote
2
replies
645
views
Microarray Analysis of Sleep Deprivation Data Experimental Design
limma gene expression r diffeential expression microarray analysis
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
1
vote
1
reply
6.2k
views
WGCNA: Different Detect Cut Heights Across Multiple Blocks
wgcna clustering gene expression
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by ▴ 10
1
vote
0
replies
867
views
Job: Bioinformatics PhD: The circadian clock in the ageing plant, University of York, UK
transcriptomics gene expression time series plant biology circadian Job
4.6 years ago dezer ▴ 10
1
vote
3
replies
2.4k
views
Reading Illumina HT12 V4.0 Data from GEO into Lumi
lumi geoquery geo illumina human ht-12 v4 gene expression
updated 6.5 years ago by 50k • written 6.5 years ago by • 0
0
votes
5
replies
1.9k
views
Getting opposite log2 fold change
deseq2 gene expression log2foldchange R
updated 5.2 years ago by 41k • written 5.2 years ago by • 0
0
votes
3
replies
1.2k
views
How to regress phenotype ~ gene + covars in limma?
limma gene expression microarray R
updated 5.1 years ago by 50k • written 5.1 years ago by • 0
0
votes
7
replies
1.3k
views
How to read Illumina data used in the MACQ project (GSE5350)
microarray normalization Illumina data MACQ project gene expression
updated 5.0 years ago by 50k • written 5.0 years ago by • 0
0
votes
2
replies
875
views
NanoStringDiff correction for variation between patient
NanoStringDiff GLM Gene expression
updated 4.7 years ago by 65k • written 4.7 years ago by • 0
0
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0
replies
865
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
4.4 years ago astridite • 0
0
votes
4
replies
1.1k
views
GOexpress - Error when plotting expression data
RNA-seq transcriptomics gene ontology gene expression GOexpress
updated 4.3 years ago by ▴ 350 • written 4.3 years ago by • 0
0
votes
3
replies
1.8k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 5.3 years ago by 0 • written 7.8 years ago by ▴ 70
0
votes
2
replies
1.0k
views
DESeq2 # of up-and down-regulated genes are approximately equal
deseq2 gene expression
updated 3.6 years ago by 41k • written 3.6 years ago by • 0
0
votes
2
replies
2.9k
views
barplot with ggplot2 for gene expression
ggplot2 barplot gene expression gene expression
updated 8.7 years ago by 65k • written 8.7 years ago by ▴ 130
0
votes
2
replies
1.2k
views
Help needed to identify common genes among datasets
datasets genes gene expression
updated 8.7 years ago by ★ 13k • written 8.7 years ago by • 0
0
votes
3
replies
1.4k
views
Anova test on gene expression data
Anova gene expression
updated 6.5 years ago by 65k • written 6.5 years ago by • 0
0
votes
2
replies
834
views
Is there any bioc tool to predict/quantify transcription factor activation using gene expression data?
transcription factor tf activation gene regulatory network gene expression
updated 7.4 years ago by • 0 • written 7.4 years ago by • 0
0
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0
replies
1.1k
views
Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
7.4 years ago carleshf ▴ 10
0
votes
0
replies
989
views
gene expression data analysis and batch effect methods
batch effect gene expression
7.0 years ago tati6406 • 0
0
votes
4
replies
1.3k
views
Gene clusters based on gene expression across samples
kmeans gene expression clustering
6.6 years ago • updated 6.5 years ago Jane Merlevede ▴ 90
0
votes
4
replies
1.3k
views
limma. After running a differential expression analysis... Can you get the individual gene expression levels between individual contrasts for each of…
limma gene expression differential gene expression
6.5 years ago arfranco ▴ 130
0
votes
0
replies
1.1k
views
Interpreting Affymetrix Human Genome U133 Plus 2.0 samples
gene expression gene expression data cel affy affymatrix
6.3 years ago torgeirous • 0
0
votes
0
replies
1.3k
views
What is the recommended method for running WGCNA on large metatranscriptomic dataset?
wgcna transcriptome big data metagenomics gene expression
6.2 years ago jol.espinoz ▴ 40
0
votes
2
replies
1.0k
views
Question about Illuminaio
illuminaio illumina human ht-12 v4 gene expression micorarray
updated 6.1 years ago by ★ 6.5k • written 6.1 years ago by • 0
0
votes
1
reply
747
views
Obtaining gene expression value for a list of genes
gene expression
updated 5.7 years ago by 50k • written 5.7 years ago by ▴ 20
0
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0
replies
899
views
Job: Postdoctoral Research Fellowship- reinforcement learning in biology- London
job bioinformatician job machine learning gene expression experimental design Job
5.6 years ago dezer ▴ 10
0
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0
replies
689
views
problem with DeMAND, gene expression matrix input
DeMAND gene expression
5.5 years ago chipolino • 0
0
votes
2
replies
1.7k
views
How can I compare the expression of two genes within the same sample?
gene expression rnaseq deseq2
updated 5.3 years ago by ▴ 30 • written 5.3 years ago by • 0
39 results • Page 1 of 1
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Answer: How to save the DEXSeq results by Michael Love 41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
Answer: Trim/Filter out-of-bounds GRanges by Michael Love 41k
https://support.bioconductor.org/p/73432/#73448
Comment: Couldn't connect to server while using "pathways" by Michael Love 41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
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